PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_91CCCF6DB1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 328aa    MW: 35411.9 Da    PI: 6.7811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_91CCCF6DB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WTteEd+ll d++++ G g+W++ ++  g++R++k+c++rw +yl
  Traes_7DS_91CCCF6DB1.1 15 KGPWTTEEDKLLMDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                            79********************************************97 PP

2Myb_DNA-binding574.3e-1868113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Traes_7DS_91CCCF6DB1.1  68 RGRFTDDEEKLIIHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                             89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1891062IPR017930Myb domain
SuperFamilySSF466898.17E-3012109IPR009057Homeodomain-like
SMARTSM007173.9E-131464IPR001005SANT/Myb domain
PfamPF002495.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-231669IPR009057Homeodomain-like
CDDcd001671.86E-101762No hitNo description
PROSITE profilePS5129427.69263117IPR017930Myb domain
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002492.1E-1668113IPR001005SANT/Myb domain
CDDcd001677.71E-1370113No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCCDGE AGVKKGPWTT EEDKLLMDYI QEKGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLRM  120
GIDPVTHRPR TDLSMLAGLP GLLAAXGNFG GSGAGTAAWD MNALKLQVDV AKFQLLQGLV  180
RALTTAAAPA PAPGMDYLME LLAVSNGGQH GGVDQNILLQ QCQWNHMNNL PALTSSAPTS  240
GMHNISGLFD GFSAGDGLSS TELGGHGGAS WSKVTVDPLM ADDIECKNNG GGSVSCEQTP  300
ASSPFDGLES LNLMDDLNTD GGWKDLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-28151174105C-Myb DNA-Binding Domain
1msf_C1e-28151174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-124KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964317.11e-133PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP02e-79MYB39_ARATH; Transcription factor MYB39
TrEMBLW5I9480.0W5I948_WHEAT; Uncharacterized protein
STRINGSi006790m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-79myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]